PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004140-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LSD
Protein Properties Length: 304aa    MW: 35193.4 Da    PI: 4.183
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004140-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.61.8e-12214238125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lLsYP+G+++V C++C tV
  AHYPO_004140-RA 214 CGSCRRLLSYPLGSKHVECSCCKTV 238
                      ************************9 PP

2zf-LSD134.33.8e-11252276125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C++Cr+lL+YP+GA sVRC +C  V
  AHYPO_004140-RA 252 CENCRVLLMYPYGAVSVRCCSCSSV 276
                      **********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.5E-15211241IPR005735Zinc finger, LSD1-type
PfamPF069438.2E-10214238IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-8249276IPR005735Zinc finger, LSD1-type
PfamPF069436.7E-9252276IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEENSSITE ANQESTSPQP LEESKSEEQK EAVLLCKQQE EVEEREINSV IDNEQVEIED  60
EKEKKSTEEE EDKMVEKEKK LMEEKMVKGK TKSMDEEEEM KEKEKKLMEE EMVEGETESM  120
NEEEVMEEKE KKLMEEEKEI VEREKKSGEE EKEMVELKEK LMEEEKKKGA EEDNDDRESV  180
KMEEIDEEEE VDGPPPGWEF PPSSSLPERG QMVCGSCRRL LSYPLGSKHV ECSCCKTVNY  240
VLEEHQVGQV KCENCRVLLM YPYGAVSVRC CSCSSVIYIG DHNRRPPLSV QQSQAFRPFG  300
VML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9RGW51e-62A0A0K9RGW5_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.18e-32lsd one like 2